Identification of novel single nucleotide polymorphisms in the growth hormone (GH) gene in Anatolian water buffalo (Bubalus bubalis) populations in Turkey

This study was conducted to investigate the growth hormone (GH; somatotropin-like) gene polymorphisms in 150 water buffalo (Bubalus bubalis) from different regions of Turkey. 404 bp long partial intron 4, exon 5, 3’ UTR regions of the GH gene (also called GH/AluI locus) and 347 bp long exon-intron 3 and partial exon 4 regions of the GH gene (also called GH/MspI locus) were amplified, and their PCR products analyzed via DNA sequencing method. Seven genotypes due to twenty single nucleotide polymorphisms (SNP) and one deletion/insertion were identified in a 347 bp long region of the GH/MspI locus. A missense mutation from glycine to glutamate amino acid and four silent mutations in the serine, threonine, and asparagine amino acids were determined in the exon 3 region of the GH gene. Four genotypes due to eight SNP were identified in a 404 bp long region of the GH/AluI locus. A missense mutation from lysine to arginine amino acid and six silent mutations in Leucine, aspartate, histidine, lysine, arginine, and cysteine amino acids were revealed in the exon 5 region of the GH gene. The partial DNA sequence of the GH gene in water buffalos was reported, and these sequences were deposited at the NCBI Genbank database with the accession numbers MN266903-MN266909 and MN530973-MN530976. These SNP may have an effect on economic (such as body composition) and carcass traits, reproduction, and milk yield and content in water buffalo populations and may prove to be useful for water buffalo breeding. © 2020 All Rights ReservedAR.14.32, NKUBAP.00.24; Tarimsal Araştirmalar ve Politikalar Genel Müdürlüğü, Türkiye Cumhuriyeti Tarim Ve Orman Bakanliği: TAGEM ??AR -GE/ ??This research was supported by the Scientific Research Projects Coordination Unit of Nam?k Kemal University, under project number NKUBAP.00.24.AR.14.32, and the Republic of Turkey Ministry of Agriculture and Forestry General Directorate of Agricultural Research and Policies, under project number TAGEM 13/AR-GE/29.This research was supported by the Scienti ?ic Research Projects Coordination Unit of Namık Kemal University, under project number NKUBAP. ??????AR. ?????? and the Republic of Turkey Ministry of Agriculture and Forestry General Directorate of Agricultural Research and Policies, under project number TAGEM ??AR -GE/ ??

Assessment of growth hormone gene polymorphism effects on reproductive traits in Holstein dairy cattle in Tunisia

Research to assess the effect of single genes on reproductive traits in bovine species is imperative to elucidate genes' functions and acquire a better perspective of quantitative traits. The present study was undertaken to characterize genetic diversity in the bovine growth hormone (GH) gene in a population of 410 Holstein dairy cows in Tunisia. The analyses were based on single nucleotide polymorphisms, and GH-AluI and GH-MspI detections and genotyping were carried out using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. Data were analyzed using a mixed linear model with the MIXED procedure to reveal the possible effect of GH genotypes on reproductive traits. The frequency data of AluI(L//V) and MspI(+//−) alleles were 87.04//12.96 and 70.06//29.94, respectively. The distribution of the frequency of GH genotypes for LL/LV/VV and (−/−)//(+/−)//(+/+) were 77.75//18.59//3.66 and 15.37//29.13//55.50, respectively. The results of the statistical analyses proved that GH-AluI showed a substantial favorable effect on exanimate traits except for the age at first calving; however, only a suggestive effect of GH-MspI on the calving interval (CI) and the days open (DI) was found. The homozygous LL genotype seemed to be advantageous with respect to the CI and the DI compared with LV and VV genotypes. Heterozygous MspI(+/−) cows tended to have a longer CI and DI than MspI(+/+) and MspI(−/−) cows, but the difference was not statistically significant. A significant effect of different GH-AluI–MspI combined genotypes was found on the number of inseminations per conception, the CI and the DI, and the LL/– combined genotype seemed to be associated with better reproductive performance. Based on these results, the LL genotype of the GH locus can be considered to be a favorable genotype for reproductive traits in Holstein dairy cattle, although these findings need to be confirmed by further research before polymorphisms can be used in a marker-assisted selection program.</p

Association of the bovine growth hormone gene with Holstein cattle reproductive parameters

Objective. To determine the association of intron 3 polymorphism of the bovine growth hormone (BGH) gene, with age at first service, first birth, first postpartum service and second birth in a population of Holstein cows in the state of Antioquia. Materials and methods. The study was conducted on 408 Holstein cows in 8 herds. Genotyping was performed using PCR-RFLP technique with DNA extracted from peripheral blood by the salting out technique. The Phenotypic information used was collected for 4 years, from a dairy production control program. To determine the association between characteristics and gene polymorphism, parametric statistical analyzes were performed as generalized linear models and linear regression analysis. Results. Allele frequency (positive) was 0.91 and was 0.09 for (negative) allele. Genotypic frequencies were 0.77, 0.2 and 0.03 for (positive/positive), (positive/negative) and (negative/negative) respectively. There were significant differences between the mean of age at first service, age at first birth, age at first postpartum service and age at second birth. For all of the (negative/negative) genotype characteristics there were greater ages for each event. Conclusions. These results suggest that intron-3 polymorphism of the BGH gene is associated with reproductive traits, facilitating the selection of individuals with favorable genotypes for use in breeding programs.Objetivo. Determinar la asociación del polimorfismo del intrón 3 del gen de la hormona de crecimiento bovino (BGH) con las edades al primer servicio, primer parto, primer servicio posparto y segundo parto en una población de vacas Holstein del departamento de Antioquia. Materiales y métodos. El estudio se realizó con 408 vacas Holstein ubicadas en 8 hatos. La genotipificación se llevó a cabo usando la técnica de PCR-RFLP con ADN extraído de sangre periférica mediante la técnica de salting out. La información fenotípica utilizada fue recopilada durante 4 años, a partir de un programa de control de producción lechera. Para determinar la asociación entre las características y el polimorfismo del gen, se realizaron análisis estadísticos paramétricos mediante modelos lineales generalizados y análisis de regresión lineal. Resultados. La frecuencia para el alelo (positivo) fue de 0.91 y para el alelo (negativo) fue de 0.09. Las frecuencias genotípicas fueron 0.77, 0.2 y 0.03 para (positivo/positivo), (positivo/negativo) y (negativo/negativo) respectivamente. Se presentaron diferencias significativas entre las medias de la edad al primer servicio, la edad al primer parto, edad al primer servicio postparto y edad al segundo parto. Para todas las características el genotipo (negativo/negativo) presentó edades más tardías para cada eventos. Conclusiones. Estos resultados sugieren que el polimorfismo del intrón 3 del gen BGH, está asociado con características de tipo reproductivo, facilitando la implementación de un programa de selección de individuos con genotipos favorables, para su uso en programas de mejoramiento genético animal